Bamboost

bamboostcore hdf5 filemap

bamboost.core.hdf5.filemap

Source: https://gitlab.com/cmbm-ethz/bamboost/-/blob/main/bamboost/core/hdf5/filemap.py

Attributes

_VT_filemap=typing.Type[typing.Union[h5py.h5py.Group, h5py.h5py.Dataset]]

Classes

KeysViewHDF5

Attributes:

__repr__=bamboost.core.hdf5.filemap.KeysViewHDF5.__str__

KeysViewHDF5.__str__(self) -> str

_FileMapMixin

_FileMapMixin.__repr__(self)

_FileMapMixin.keys(self) -> KeysViewHDF5

_FileMapMixin.datasets(self) -> tuple[str, ...]

_FileMapMixin.groups(self) -> tuple[str, ...]

_FileMapMixin._ipython_key_completions_(self)

_FileMapMixin._repr_pretty_(self, p, _cycle)

Arguments:

p
_cycle

FileMap

FileMap(self, file)

Arguments:

file:HDF5File

Attributes:

_valid:bool
_file=bamboost.core.hdf5.filemap.FileMap(file)
_dict:dict[HDF5Path, bamboost.core.hdf5.filemap._VT_filemap]={}
valid=False

Bases

_FileMapMixin6

_FileMapMixin.keys()
_FileMapMixin.datasets()
_FileMapMixin.groups()
_FileMapMixin._ipython_key_completions_()
_FileMapMixin._repr_pretty_()
_FileMapMixin.__repr__()

FileMap.__len__(self) -> int

FileMap.__iter__(self) -> Iterator[HDF5Path]

FileMap.__delitem__(self, key) -> None

Arguments:

key:str

FileMap.__setitem__(self, key, value) -> None

Arguments:

key:str
value:_VT_filemap

FileMap.__getitem__(self, key) -> _VT_filemap

Arguments:

key:str

FileMap.populate(self, *, exclude_numeric=False) -> None

Assumes the file is open.

Arguments:

exclude_numeric:bool=False

FileMap.invalidate(self) -> None

FilteredFileMap

FilteredFileMap(self, file_map, parent) -> None

Arguments:

file_map:FileMap
parent:str

Attributes:

parent=HDF5Path(parent)
file_map=bamboost.core.hdf5.filemap.FilteredFileMap(file_map)
valid:bool

Bases

_FileMapMixin6

_FileMapMixin.keys()
_FileMapMixin.datasets()
_FileMapMixin.groups()
_FileMapMixin._ipython_key_completions_()
_FileMapMixin._repr_pretty_()
_FileMapMixin.__repr__()

FilteredFileMap.__len__(self)

FilteredFileMap.__iter__(self)

FilteredFileMap.__delitem__(self, key)

Arguments:

key

FilteredFileMap.__setitem__(self, key, value)

Arguments:

key:str
value

FilteredFileMap.__getitem__(self, key)

Arguments:

key:str

FilteredFileMap.children(self) -> Iterator[HDF5Path]

FilteredFileMap.children_groups(self) -> Iterator[HDF5Path]

FilteredFileMap.children_datasets(self) -> Iterator[HDF5Path]

file

This module provides an enhanced interface for working with HDF5 files. Its main goal is to provide automatic file management with heavy caching to limit file access to a minimum.

hdf5path

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